dat = readRDS('../test/example_data.rds')
names(dat)
names(dat$X)
rbind(dim(dat$X[[1]]), dim(dat$X[[2]]), dim(dat$X[[3]]))
dat$loglik
| 100 | 300 |
| 100 | 300 |
| 100 | 300 |
The simulated data-set has 300 samples and 300 features. For this simulated data we know the model log-likelihood is -253747.5.
We run a basic PFA using standard EM algorithm with uniform prior for sample distribution on edges, and random initialization of factors.
set.seed(999)
K = length(dat$X) + 1
X = do.call(rbind, dat$X)
control = list(logfile = 'example_data', verbose = F, alpha = NULL)
res = pfar::pfa(X, K = K, control = control)
saveRDS(res, 'example_result.rds')
print(res)
$F_init
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] -13.348998 -6.135172 -0.2410379 11.148072 -27.134831 0.5598765
[2,] -7.863766 -16.793477 -0.8523309 -3.953813 -19.079478 -0.2074457
[3,] 21.553799 -2.795115 0.6323632 9.772271 -8.718292 -7.3564686
[4,] -12.099822 -2.057069 2.1463089 5.418662 -11.954877 -4.2176940
[,7] [,8] [,9] [,10] [,11] [,12] [,13]
[1,] 5.735254 -1.25255505 -10.073224 41.28228 -37.117860 0.7823492 5.613040
[2,] 8.767105 -0.04930917 2.801243 94.40522 -14.885702 0.7714685 6.803914
[3,] -52.307295 6.76842230 -14.100849 -10.18895 34.490508 0.2554594 -9.832734
[4,] 17.368005 0.82637636 5.976363 -12.98749 -1.903003 0.1782108 -2.472395
[,14] [,15] [,16] [,17] [,18] [,19] [,20]
[1,] -17.314087 -1.2006322 -1.093316 39.707172 -0.6484892 -18.204571 1.424071
[2,] 2.841044 -1.0222291 -4.175962 8.051926 1.2533393 -10.710817 -2.779842
[3,] 72.385214 -0.3656819 20.736154 22.628640 -0.2693312 -5.838646 -22.065844
[4,] -19.034954 -0.9360468 2.383175 -9.988390 0.6711221 -10.380659 12.857708
[,21] [,22] [,23] [,24] [,25] [,26] [,27]
[1,] 2.929561 7.841823 -72.13905 7.572319 1.6534863 10.81169415 1.9237456
[2,] 2.683675 -8.180446 45.26138 -57.463676 -0.9029282 4.69181826 -0.3714082
[3,] 3.131881 18.695659 60.24553 -2.302459 -2.0929239 2.78812234 -3.2250256
[4,] 44.725524 17.613733 -13.88307 38.544819 -2.6557854 0.01630739 4.3320699
[,28] [,29] [,30] [,31] [,32] [,33]
[1,] 16.50248 6.31669832 -11.0288759 -1.2770891 -15.29709 10.510806
[2,] 37.24271 -0.02830089 -8.6085011 -0.7748133 -21.64179 -2.301484
[3,] 20.44508 -47.08142972 0.1405926 0.6179233 -35.63414 -80.331685
[4,] 19.56172 -2.91586040 -23.6079005 3.7937406 27.82836 -85.257507
[,34] [,35] [,36] [,37] [,38] [,39] [,40]
[1,] -0.3173273 7.1088891 -22.68315 0.57264089 -1.2799625 1.4469716 0.4164889
[2,] -0.4767600 10.2834031 12.67547 0.22529611 -0.6847221 1.4925852 1.3817822
[3,] 0.5728272 -1.5964410 -51.80986 0.02321989 -0.1352115 -0.4441614 0.1589391
[4,] 0.2889636 -0.8374573 19.10468 1.83568022 0.4391361 0.6690871 1.2329059
[,41] [,42] [,43] [,44] [,45] [,46]
[1,] 51.305246 -0.37943165 81.0715064 0.03659857 1.9694152 0.001568954
[2,] 51.280823 0.07157776 -92.7631572 0.04017713 -0.5460304 -1.089297582
[3,] 8.895741 -0.02720362 -0.1497575 0.05096505 1.5467576 -6.682089727
[4,] 3.146349 0.36087889 47.9619982 0.39974055 -0.2499945 3.609749818
[,47] [,48] [,49] [,50] [,51] [,52]
[1,] -4.2452099 0.9995401 -1.2426365 28.840178 0.1823778 -0.1688395
[2,] 3.5852012 -0.5178207 -0.1588095 26.836087 -10.6808494 0.3128267
[3,] 0.1651346 0.8559106 0.8361425 -8.803301 -4.3821510 -1.0652417
[4,] -0.7749267 -3.7026631 0.3106491 20.223351 5.4259939 2.4696126
[,53] [,54] [,55] [,56] [,57] [,58] [,59]
[1,] -2.564287 -3.049239 -2.626200 -1.6663045 -0.2676920 0.8502024 -10.034948
[2,] -4.448601 -2.065220 5.569584 -0.7867428 0.6051425 1.5803933 5.386128
[3,] 6.017011 -1.209852 -1.947987 -3.9933715 1.8519133 1.9080995 -27.948103
[4,] -23.961868 3.299152 -4.999638 2.1845299 0.5507996 1.2123852 28.731797
[,60] [,61] [,62] [,63] [,64] [,65] [,66]
[1,] 2.937819 6.815602 5.217984 17.28591 0.3806247 23.467148 -7.469575
[2,] 4.836168 -6.313231 2.329958 32.05255 2.8044896 -18.547281 4.050836
[3,] -4.027877 6.580486 -1.634543 -13.11690 -1.8008789 -42.096821 -7.629027
[4,] 2.321424 5.712193 -4.090386 12.24915 2.0670135 4.781562 3.939384
[,67] [,68] [,69] [,70] [,71] [,72] [,73]
[1,] 0.96161420 -49.14527 3.519005 -0.2845107 40.952305 -29.7950299 2.814859
[2,] 0.88857515 93.75422 -3.961755 0.3094709 4.549892 0.5010759 -2.672563
[3,] 0.80295193 -38.95165 2.525233 0.1515185 47.682420 17.0047915 -6.506340
[4,] 0.03805528 15.84103 1.693943 0.1667022 39.964786 2.7073181 3.388306
[,74] [,75] [,76] [,77] [,78] [,79]
[1,] -0.6431580 -29.730941 0.10137963 -1.940551 7.543233 0.2388123
[2,] -0.5946237 7.118849 1.62840494 8.044427 -27.543384 0.9220701
[3,] 0.5849504 -96.223056 -3.85933137 -12.162317 13.333578 -0.6806710
[4,] -0.6097417 -14.334045 0.07384003 -7.656222 3.161408 -2.3939927
[,80] [,81] [,82] [,83] [,84] [,85] [,86]
[1,] 8.650392 -36.45755 -1.4018759 -15.02501 0.8536503 21.74009 -0.9561480
[2,] 14.741939 7.77986 -4.5736108 -21.51473 0.8538885 -19.55070 0.1258712
[3,] -7.343168 13.13859 0.2847118 -20.07377 -0.1948219 14.84178 -0.4869168
[4,] 13.448893 -15.56777 -4.9864102 -24.14492 1.6309945 -19.99288 -0.5132478
[,87] [,88] [,89] [,90] [,91] [,92]
[1,] 49.458493 -12.1500118 4.7134814 -75.6527003 -8.822006 -45.665876
[2,] 22.914821 -3.3523416 0.2646867 -0.9352502 -18.522059 40.077296
[3,] 8.087877 -5.9657654 -0.1474845 33.7219630 -11.685642 -3.957804
[4,] -13.447784 -0.5519742 -1.1936334 -2.0517400 -75.765940 24.405976
[,93] [,94] [,95] [,96] [,97] [,98]
[1,] 13.814199 3.4297062 2.6003642 2.339364 -0.8437974 -0.3665396
[2,] -10.422209 -0.3414881 1.9776008 -21.360664 -3.3008659 -0.2736450
[3,] -12.718330 -0.5146143 -0.2103174 -16.495004 0.2820700 -0.5777662
[4,] -7.210771 2.5689167 1.1472385 13.457509 -3.5847303 2.0713364
[,99] [,100] [,101] [,102] [,103] [,104]
[1,] 0.3368847 -1.2668700 -5.8915476 0.2259265 0.8177645 1.1087324
[2,] 19.1117597 -0.7968636 -0.1390304 -0.3491989 -10.5421456 4.3180236
[3,] -3.2240110 -0.1319639 2.9308950 -0.5476513 -7.3253471 -3.4956402
[4,] -4.0490343 -0.4570364 7.7109045 -0.6176941 -0.6965291 -0.6676457
[,105] [,106] [,107] [,108] [,109] [,110]
[1,] 4.1932606 2.154551 0.1071930 0.1509100 8.074045 1.36041361
[2,] 0.2201513 14.949757 -2.0093705 -0.7635891 -16.238237 0.24232214
[3,] 1.5474590 -8.252594 -0.3020748 0.6289739 -11.151716 -0.09360307
[4,] 3.7155598 -17.557084 0.1354761 0.2775487 -5.523109 -0.22873560
[,111] [,112] [,113] [,114] [,115] [,116]
[1,] -0.19648547 7.0500985 -1.220143 -1.2396751 1.6550994 0.7183490
[2,] -0.14734393 0.9711313 -2.742206 -0.8098564 1.4960106 0.9035872
[3,] -0.04393549 -5.5981705 1.016658 -2.1504776 -0.3103684 0.8004425
[4,] -0.64681620 -0.6067448 11.444425 -1.1334951 0.9043194 1.0832720
[,117] [,118] [,119] [,120] [,121] [,122]
[1,] 24.7252569 -4.902266 -11.791994 6.730668 -0.7233052 -3.5447634
[2,] 0.4021599 9.853904 -11.488905 12.298208 -2.9448013 -2.5814372
[3,] -58.3472183 1.509067 -13.900937 -15.936802 -8.4257698 -0.5263897
[4,] -20.6405615 9.305461 -2.200644 5.445051 7.2318619 -2.0768009
[,123] [,124] [,125] [,126] [,127] [,128]
[1,] -68.67766 -0.7404584 1.32009364 44.6045909 -1.089446 14.92927
[2,] 30.90809 -0.6579211 0.06201845 -0.4407469 -2.660409 27.75214
[3,] -70.12242 -0.1558405 -1.83490447 34.5513883 2.012280 14.48151
[4,] -47.34847 -0.4761025 2.63142055 -22.1591929 -2.120246 -14.28321
[,129] [,130] [,131] [,132] [,133] [,134]
[1,] -16.781393 0.6145901 -0.2143939 17.9788073 -1.0203267 4.351020
[2,] -3.120577 -0.3797346 -0.5138562 -5.1325461 4.2509325 -8.303529
[3,] -7.270716 -0.5894463 -0.2138536 -0.2605618 5.9675985 -5.115247
[4,] -13.083494 0.6667856 -0.7393831 -1.7756501 0.9884732 2.312402
[,135] [,136] [,137] [,138] [,139] [,140]
[1,] -8.244828 12.377594 2.717242 13.08821 -0.265212716 -0.57897459
[2,] 11.002132 8.605466 -20.682311 55.63882 -0.797487693 -0.42633749
[3,] -17.812699 -2.267621 -9.825880 -33.63457 -0.723940233 -0.16568144
[4,] -19.580024 -9.298659 49.043804 -26.68136 -0.003767177 0.02962869
[,141] [,142] [,143] [,144] [,145] [,146] [,147]
[1,] 0.5257832 -2.144575 6.105603 1.8135950 -7.743168 -27.457467 28.99450
[2,] 2.0272339 8.174273 63.924905 2.1568876 -3.593888 -6.610761 68.90983
[3,] -0.4799038 1.386036 74.791944 -0.1838934 4.564543 -5.916161 15.94686
[4,] 4.6828929 1.705606 -49.477089 3.8710105 13.172629 -31.042253 -63.35333
[,148] [,149] [,150] [,151] [,152] [,153] [,154]
[1,] -1.517268 -1.31400847 -10.64780 -15.521435 1.526658 19.13285 5.346040
[2,] -0.112988 0.15201922 10.51398 4.656731 -66.931403 18.58389 2.416978
[3,] -1.265819 -0.72666006 -10.55274 -15.690948 46.660834 27.16045 -4.971443
[4,] -2.987775 -0.02030918 -13.34989 -3.173559 -67.237441 24.46403 -4.974347
[,155] [,156] [,157] [,158] [,159] [,160]
[1,] 2.035803 -6.415885 -8.829692 1.17418190 0.007293508 37.99177
[2,] -1.478969 -3.756303 8.790374 -0.06585956 -0.026473932 -14.95440
[3,] -5.149492 8.938089 16.428827 -1.79632823 0.209028321 -59.01635
[4,] -5.949733 -27.820230 8.745927 -0.49661759 0.179236203 -52.62035
[,161] [,162] [,163] [,164] [,165] [,166]
[1,] 0.09929574 3.880564 2.894051 0.1561344 46.46263 -2.61634846
[2,] -0.61278013 -10.824268 -4.125399 -0.3739111 -21.28410 -3.81026830
[3,] 1.23066644 3.018174 6.263258 0.1139255 -30.43268 0.41359232
[4,] 0.19528709 -42.905374 30.472715 0.3410982 -12.76187 -0.05089548
[,167] [,168] [,169] [,170] [,171] [,172] [,173]
[1,] 5.07735 -0.4415129 0.06263033 7.3642860 4.732313 1.7408698 -38.34530
[2,] -29.65005 -0.2876143 0.06934697 3.7850145 -3.612198 -1.7138984 -55.90282
[3,] 80.34586 -0.3655313 -0.20382934 -1.2201482 2.689550 0.9920767 -32.19101
[4,] -32.79736 -0.8652638 1.12057089 -0.1929553 -1.365000 0.1927220 -42.78202
[,174] [,175] [,176] [,177] [,178] [,179]
[1,] 3.7383031 0.31258370 0.6347402 -8.343737 1.1146345 -4.672129
[2,] -0.3268397 0.49054626 1.3644301 -20.413601 -0.8247436 13.531154
[3,] 43.9949735 0.03262433 2.0318798 -1.609878 -0.2647686 -6.786325
[4,] 9.2905605 0.13947723 -1.0604721 -6.481981 0.4209331 6.849986
[,180] [,181] [,182] [,183] [,184] [,185] [,186]
[1,] -15.1471326 1.215206 2.7370024 2.107834 4.573664 -35.08178 0.3577911
[2,] 12.4428467 1.343163 1.3110005 -1.137023 -5.481078 16.65493 2.4488976
[3,] 0.4758060 -1.565849 -1.9437721 -0.482244 2.199486 32.37581 1.9977334
[4,] -0.7747972 -0.970846 0.6803685 1.113164 34.076748 -34.38905 1.2962291
[,187] [,188] [,189] [,190] [,191] [,192]
[1,] 0.8873579 -0.294400927 -6.6776713 -0.9819091 60.56014 -0.9151945
[2,] 9.8814347 -0.335839266 9.1474322 0.4521919 -10.39417 2.7585114
[3,] -13.7478853 0.007756409 -0.8540261 -0.1440629 37.87454 -1.8032514
[4,] 1.3508242 -0.105155658 -41.4744214 -1.2131766 -44.04116 -0.7185797
[,193] [,194] [,195] [,196] [,197] [,198] [,199]
[1,] -4.108866 -2.4565727 -3.252201 -2.023826 3.032976 9.670344 -0.2898651
[2,] 3.732077 -4.3704270 3.490231 11.313819 5.488640 -38.926396 -1.3638446
[3,] -5.994188 2.5606942 7.054815 -6.104189 61.376312 -21.298171 -0.8058326
[4,] -2.381770 -0.8603968 2.755025 17.541870 16.221441 16.390867 -3.2124067
[,200] [,201] [,202] [,203] [,204] [,205]
[1,] 11.2288136 0.12159121 5.75585958 0.15077085 0.26965409 -2.499600e-01
[2,] 6.1710122 0.22792518 3.32319181 -0.09718763 0.18378886 -1.080401e+00
[3,] 0.9635929 0.05481598 0.09522514 0.98719000 -0.04195652 1.991442e+00
[4,] -0.7142684 0.13467102 2.28602848 -0.41731236 0.18680988 -7.766123e-05
[,206] [,207] [,208] [,209] [,210] [,211]
[1,] 0.8318784 0.1596014 67.86086 2.301634 -12.295150 -1.168839338
[2,] 3.2991157 -0.8989386 -72.50600 -3.849620 29.868424 -2.515768759
[3,] 5.1782668 1.4250454 18.39739 -5.728878 6.112689 -0.069669979
[4,] 7.6484912 -0.7234705 -101.56382 -4.513281 -6.264011 0.003537183
[,212] [,213] [,214] [,215] [,216] [,217]
[1,] 12.053206 10.029422 15.600101 -0.8987619 1.8502253 -3.854532
[2,] 1.368173 -1.013634 -12.250656 0.2324481 -0.8106771 9.217520
[3,] -4.061305 -1.977501 -18.994119 0.7529249 -0.9833653 27.134161
[4,] -13.299733 13.978970 2.426743 -0.6490500 -1.0879298 -11.435804
[,218] [,219] [,220] [,221] [,222] [,223]
[1,] 0.07712361 0.7301310 5.1690833 0.09084376 -2.5336063 8.069897
[2,] 0.07093877 0.0433731 11.9672239 0.18797589 0.6502628 -4.856980
[3,] -0.07444057 0.6301796 -0.7305488 -0.02614767 -3.6845385 11.902138
[4,] 0.02566154 0.2085854 -2.7793164 0.26560011 -0.3407562 12.851965
[,224] [,225] [,226] [,227] [,228] [,229]
[1,] 0.06086713 29.269564 -12.2250059 0.140575641 14.546089 13.47702
[2,] 0.11579487 11.116149 39.9320906 -0.058228777 5.747561 -14.87454
[3,] 0.02792822 20.149404 28.7261792 -0.005357235 -3.222679 76.22386
[4,] 0.01932631 -5.425558 -0.4441624 -0.227455638 17.408164 39.80388
[,230] [,231] [,232] [,233] [,234] [,235]
[1,] 23.353430 -3.999691 -4.647498 -0.24234959 -0.9556609 2.420566
[2,] -2.600940 -10.101553 22.955998 0.10443657 -0.4158120 -26.120650
[3,] 11.737239 -2.348521 -4.515438 -0.05467059 1.0487462 -23.326187
[4,] -8.893813 -20.647810 25.152954 0.20134370 0.8776308 -59.689954
[,236] [,237] [,238] [,239] [,240] [,241]
[1,] 15.770862 -0.07964064 -1.587714 -0.11489238 -0.2276306 -10.355157
[2,] -8.308193 -4.50237465 6.644429 -0.08762653 -1.2421405 2.656532
[3,] -44.372363 -7.41326384 4.704418 3.13823236 0.8570626 13.261889
[4,] 8.057141 -5.75169330 -3.020538 1.53142157 -0.6937480 3.360219
[,242] [,243] [,244] [,245] [,246] [,247]
[1,] -3.165488 0.18023446 11.093354 1.618321 -0.01669725 -2.2392429
[2,] 14.534897 0.20651984 -7.776944 6.123576 -0.02695605 -1.1472225
[3,] -15.029727 0.18479130 7.313988 -3.286103 -0.10475574 0.6275386
[4,] -1.163888 -0.07398812 -4.673323 2.100906 0.17451237 -2.0473055
[,248] [,249] [,250] [,251] [,252] [,253]
[1,] -7.482765 4.3174827 -17.0103671 1.5955486 0.9033160 0.03999375
[2,] -10.469722 -9.5192126 4.3521495 -0.7881042 0.1697743 -0.29542519
[3,] 3.853312 0.3115897 0.3253829 0.2771575 2.5593542 -0.12389804
[4,] 15.056859 7.1950483 -11.0465083 0.3206301 -6.0788903 -0.01633137
[,254] [,255] [,256] [,257] [,258] [,259]
[1,] -0.8637981 -0.0564341 0.10781016 -0.9135963 -5.830103 -0.019961967
[2,] 0.4793273 0.2875093 0.09321535 -35.9406862 -35.153761 0.009556619
[3,] -5.2863976 1.3361763 -0.15480517 17.6201461 24.213999 -0.031953635
[4,] 3.8320998 -3.9897389 -0.02988476 26.9353049 37.857536 -0.015357842
[,260] [,261] [,262] [,263] [,264] [,265]
[1,] 4.3946840 4.2304021 3.2615779 0.066378825 -45.262078 -0.03275418
[2,] 3.6163046 0.9718617 6.2941726 0.104314803 -11.957298 -0.07791907
[3,] -0.9490384 -1.2975397 0.6039163 0.172325255 9.282745 0.14556054
[4,] 1.3145183 -0.3787254 -15.5577922 0.003380326 18.006886 -0.12986855
[,266] [,267] [,268] [,269] [,270] [,271] [,272]
[1,] 45.425718 -11.724563 4.4381326 -7.517928 5.451095 24.75900 -9.4317498
[2,] -21.596237 3.548746 1.8195592 -10.181112 1.525206 28.91898 -0.6312319
[3,] -49.396201 -18.596712 7.7505596 -17.741561 3.205060 36.28934 -9.8503639
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[177,] 2.386947e-01 0.7613053018 6.345905e-68 6.951239e-66
[178,] 2.135205e-01 0.7864795291 9.356191e-55 3.994571e-54
[179,] 1.992398e-01 0.8007601550 1.309858e-48 1.304232e-47
[180,] 2.048468e-01 0.7951532337 6.711438e-51 3.740290e-50
[181,] 2.337575e-01 0.7662424951 5.117932e-65 9.486361e-63
[182,] 1.704388e-01 0.8295611847 1.672345e-36 1.018116e-34
[183,] 1.662416e-01 0.8337584059 1.777684e-34 2.126837e-34
[184,] 1.716877e-01 0.8283123209 6.684882e-37 1.964348e-35
[185,] 1.487646e-01 0.8512353765 2.679472e-28 1.871430e-27
[186,] 1.158911e-01 0.8841088856 1.116385e-18 1.286773e-17
[187,] 1.530849e-01 0.8469150551 3.536831e-30 9.860630e-30
[188,] 1.189126e-01 0.8810874030 2.434806e-19 2.325614e-18
[189,] 1.090136e-01 0.8909863647 7.346637e-17 1.162160e-15
[190,] 8.091907e-02 0.9190809265 2.783394e-11 1.192838e-10
[191,] 8.590429e-02 0.9140957051 3.778630e-12 1.382571e-11
[192,] 8.263083e-02 0.9173691647 2.770620e-11 2.918789e-10
[193,] 7.241690e-02 0.9275830848 2.869484e-09 1.040898e-08
[194,] 5.762323e-02 0.9423722123 1.427742e-06 3.127610e-06
[195,] 5.683933e-02 0.9431601420 2.959071e-07 2.303503e-07
[196,] 1.404951e-02 0.9742500153 7.494330e-03 4.206150e-03
[197,] 8.549754e-03 0.9885616791 7.655884e-04 2.122978e-03
[198,] 6.897805e-03 0.9799600862 3.741247e-03 9.400862e-03
[199,] 1.640602e-02 0.9786788340 2.503748e-03 2.411397e-03
[200,] 1.558843e-03 0.9948802231 1.994539e-03 1.566395e-03
[201,] 5.062493e-120 0.0012469319 5.761119e-105 9.987531e-01
[202,] 3.299582e-120 0.0023060672 2.036827e-104 9.976939e-01
[203,] 1.061672e-119 0.0045341805 1.001211e-103 9.954658e-01
[204,] 4.761096e-120 0.0023763670 3.932260e-104 9.976236e-01
[205,] 1.951430e-119 0.0009176536 5.323645e-105 9.990823e-01
[206,] 7.835889e-119 0.0068162948 2.950115e-104 9.931837e-01
[207,] 5.106650e-119 0.0068791217 2.527170e-104 9.931209e-01
[208,] 7.907269e-119 0.0041246074 2.237207e-104 9.958754e-01
[209,] 2.055470e-119 0.0158108198 3.202803e-103 9.841892e-01
[210,] 5.840485e-120 0.0259970368 5.555501e-103 9.740030e-01
[211,] 7.267499e-120 0.0426209571 1.808612e-103 9.573790e-01
[212,] 1.815480e-118 0.0613976590 1.515149e-105 9.386023e-01
[213,] 3.027851e-119 0.0670942907 8.943544e-104 9.329057e-01
[214,] 8.091858e-121 0.0862830503 7.427420e-106 9.137169e-01
[215,] 3.777329e-122 0.1181078151 9.378446e-111 8.818922e-01
[216,] 1.152252e-121 0.0893027689 2.018511e-106 9.106972e-01
[217,] 3.680789e-121 0.1352786947 7.710994e-109 8.647213e-01
[218,] 2.678395e-128 0.1418614537 7.773666e-107 8.581385e-01
[219,] 2.328327e-127 0.1423487606 1.860371e-109 8.576512e-01
[220,] 2.067794e-126 0.1547384414 2.576270e-109 8.452616e-01
[221,] 4.624019e-124 0.1146011602 4.217048e-106 8.853988e-01
[222,] 2.006182e-131 0.1678950726 3.913376e-116 8.321049e-01
[223,] 1.020020e-129 0.1799584425 2.128467e-120 8.200416e-01
[224,] 2.704012e-137 0.2167409550 2.101936e-123 7.832590e-01
[225,] 1.070145e-135 0.2180098077 2.093379e-123 7.819902e-01
[226,] 5.723467e-136 0.2305139992 1.732653e-122 7.694860e-01
[227,] 1.245808e-138 0.2236335584 4.585410e-126 7.763664e-01
[228,] 1.321132e-136 0.2510431929 8.881288e-137 7.489568e-01
[229,] 3.072135e-142 0.2638665825 4.056118e-135 7.361334e-01
[230,] 1.301166e-143 0.2647414646 7.065103e-134 7.352585e-01
[231,] 1.532301e-148 0.2787116014 2.493870e-139 7.212884e-01
[232,] 2.423367e-140 0.2636949498 3.932410e-134 7.363051e-01
[233,] 3.619508e-141 0.2647419379 4.338386e-136 7.352581e-01
[234,] 1.298734e-151 0.2966008960 8.721276e-146 7.033991e-01
[235,] 4.873423e-149 0.3066658932 4.304097e-147 6.933341e-01
[236,] 4.753471e-160 0.3126071454 1.780119e-149 6.873929e-01
[237,] 1.006280e-154 0.3017965158 3.006575e-145 6.982035e-01
[238,] 7.493079e-162 0.3574024432 2.631447e-162 6.425976e-01
[239,] 1.158428e-176 0.3880903967 3.336350e-161 6.119096e-01
[240,] 5.250920e-171 0.3600679815 1.177765e-161 6.399320e-01
[241,] 3.632512e-188 0.4073786472 1.929437e-179 5.926214e-01
[242,] 3.675624e-172 0.3846909227 1.607474e-176 6.153091e-01
[243,] 9.144428e-180 0.3928005305 1.171113e-167 6.071995e-01
[244,] 4.277285e-187 0.4164860825 1.334298e-181 5.835139e-01
[245,] 1.032857e-181 0.4288817309 3.527611e-191 5.711183e-01
[246,] 5.984955e-204 0.4436866004 1.561263e-193 5.563134e-01
[247,] 1.220116e-179 0.4160329749 2.006403e-181 5.839670e-01
[248,] 1.578434e-203 0.4665921735 6.491465e-185 5.334078e-01
[249,] 1.620327e-174 0.5062615011 1.232620e-162 4.937385e-01
[250,] 1.121718e-201 0.4438254603 6.009518e-183 5.561745e-01
[251,] 2.482711e-176 0.5032314263 4.441912e-164 4.967686e-01
[252,] 1.033430e-169 0.5140505756 6.761271e-150 4.859494e-01
[253,] 5.094496e-190 0.4842791057 1.594348e-179 5.157209e-01
[254,] 1.677967e-177 0.5015736757 2.845819e-160 4.984263e-01
[255,] 1.699275e-158 0.5305924827 7.586700e-145 4.694075e-01
[256,] 3.381984e-169 0.5146068982 4.039934e-156 4.853931e-01
[257,] 8.882695e-138 0.5620867276 2.958713e-125 4.379133e-01
[258,] 4.267338e-143 0.5536986794 6.326388e-131 4.463013e-01
[259,] 1.254657e-135 0.5662886907 3.305704e-117 4.337113e-01
[260,] 3.046872e-136 0.5658286763 5.910900e-123 4.341713e-01
[261,] 9.833567e-118 0.5965282133 4.097952e-110 4.034718e-01
[262,] 5.485249e-111 0.6088242580 7.766620e-104 3.911757e-01
[263,] 1.139999e-122 0.5864651251 1.774940e-114 4.135349e-01
[264,] 3.991599e-95 0.6398360475 6.569618e-85 3.601640e-01
[265,] 5.165614e-95 0.6396117049 2.723828e-83 3.603883e-01
[266,] 3.139238e-95 0.6380612204 2.741032e-85 3.619388e-01
[267,] 1.221542e-77 0.6759332723 1.344946e-68 3.240667e-01
[268,] 4.817795e-71 0.6904280679 1.134776e-64 3.095719e-01
[269,] 2.058798e-82 0.6653174037 1.111260e-71 3.346826e-01
[270,] 2.528225e-73 0.6855046139 7.972504e-69 3.144954e-01
[271,] 5.266887e-67 0.6987398231 2.439936e-59 3.012602e-01
[272,] 9.973931e-75 0.6813376007 4.467480e-68 3.186624e-01
[273,] 4.279294e-56 0.7264187281 2.591321e-51 2.735813e-01
[274,] 1.983826e-68 0.6961570553 9.183708e-64 3.038429e-01
[275,] 5.000724e-51 0.7383383039 3.419581e-45 2.616617e-01
[276,] 1.100362e-50 0.7389964507 1.839629e-49 2.610035e-01
[277,] 2.847888e-31 0.7961524788 1.102248e-30 2.038475e-01
[278,] 8.762937e-40 0.7737672116 5.077691e-35 2.262328e-01
[279,] 1.732587e-46 0.7529087106 2.653022e-40 2.470913e-01
[280,] 1.691004e-33 0.7896485783 3.049743e-31 2.103514e-01
[281,] 2.036241e-34 0.7927523068 1.291197e-29 2.072477e-01
[282,] 1.687186e-41 0.7676307396 7.695495e-39 2.323693e-01
[283,] 8.625400e-31 0.8025878310 5.495485e-28 1.974122e-01
[284,] 2.088441e-23 0.8330220254 4.109409e-20 1.669780e-01
[285,] 1.635463e-19 0.8478250603 3.295476e-17 1.521749e-01
[286,] 1.295982e-13 0.8798114023 3.086416e-12 1.201886e-01
[287,] 5.770715e-16 0.8668929676 1.105128e-13 1.331070e-01
[288,] 5.685203e-09 0.9075347802 5.845299e-09 9.246521e-02
[289,] 1.284144e-13 0.8825303775 1.146132e-10 1.174696e-01
[290,] 2.864516e-17 0.8592594710 3.343122e-15 1.407405e-01
[291,] 1.781848e-06 0.9312361429 6.462843e-07 6.876143e-02
[292,] 5.152109e-08 0.9231686922 6.151460e-06 7.682510e-02
[293,] 7.636996e-04 0.9550555749 3.122870e-04 4.386844e-02
[294,] 1.831942e-07 0.9229363466 2.711107e-06 7.706076e-02
[295,] 1.082812e-04 0.9512074644 6.033985e-04 4.808086e-02
[296,] 2.251432e-07 0.9270983627 4.883636e-05 7.285258e-02
[297,] 3.165321e-04 0.9785259373 2.961566e-03 1.819596e-02
[298,] 3.009536e-04 0.9655384122 6.152249e-04 3.354541e-02
[299,] 4.326891e-03 0.9813952730 4.163593e-03 1.011424e-02
[300,] 2.863136e-03 0.9950276056 4.467908e-04 1.662468e-03
$P
[,1] [,2] [,3] [,4]
[1,] 2.840377e-03 0.000000000 0.000000e+00 0.00000000
[2,] 3.263836e-01 0.006383986 0.000000e+00 0.00000000
[3,] 5.880813e-114 0.315898028 9.685471e-03 0.00000000
[4,] 2.156421e-119 0.317826516 6.030310e-104 0.02098203
$alpha
NULL
$loglik
[1] -282396.2 -261067.0 -257144.3 -255428.0 -254674.0 -254371.5 -254248.3
[8] -254186.1 -254150.5 -254129.9 -254117.5 -254109.7 -254104.6 -254101.1
[15] -254098.7 -254096.9 -254095.5 -254094.4 -254093.6 -254093.0 -254092.5
[22] -254092.0 -254091.7 -254091.4 -254091.2 -254091.1 -254090.9 -254090.8
[29] -254090.7 -254090.6 -254090.5 -254090.5 -254090.4 -254090.4 -254090.3
[36] -254090.3 -254090.3 -254090.3 -254090.3 -254090.2 -254090.2 -254090.2
[43] -254090.2 -254090.2 -254090.2 -254090.2 -254090.2 -254090.2 -254090.2
[50] -254090.2 -254090.2 -254090.2 -254090.2 -254090.1 -254090.1 -254090.1
[57] -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.1
[64] -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.1
[71] -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.0 -254090.0
[78] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[85] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[92] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[99] -254090.0 -254090.0 -254090.0 -254090.0
$BIC
[1] 521926
$niter
[1] 102
$status
[1] 0
$runtime
user system elapsed
283.452 20.376 96.711
The algorithm converged within 102 iterations. The fitted log-likelihood is -254090.0.
The previous run has used a random factor initialization. There are cases when we worry about convergence issue, ie, EM algorithm trapped on local optima, and the way out is to initialize the algorithm with different factors and adopt an initialization that gives the best log-likelihood.
Here we add init = c(20, 5) to the control list. It means we want to try 20 random initial factors and pick up the best one in likelihood after 5 iterations:
set.seed(999)
control = list(logfile = 'example_data', verbose = F, alpha = NULL, init = c(20,5))
res = pfar::pfa(X, K = K, control = control)
res
$F_init
[,1] [,2] [,3] [,4] [,5] [,6] [,7]
[1,] -1.779343 -1.648705 -0.54478104 -1.739496 4.9511441 -1.423721 5.394134
[2,] -2.577555 -2.095564 0.08257832 -0.923324 -2.3667268 2.767845 8.539143
[3,] -3.023605 -1.656210 0.23060192 -2.066017 -0.1884845 1.353863 -1.993595
[4,] 2.085944 1.964491 0.51729482 1.870755 -1.1152618 -1.365222 -10.348029
[,8] [,9] [,10] [,11] [,12] [,13]
[1,] 2.0389172 -0.10411703 -6.868646 -0.821511 -0.15643893 -3.4024710
[2,] 0.7140160 1.37308833 5.399136 4.339226 0.76845140 -4.7144721
[3,] 1.5283138 0.83875048 -2.753111 -3.420314 0.04768409 -3.9941015
[4,] -0.1491795 -0.04432678 5.649249 -4.515974 0.79939268 0.7593258
[,14] [,15] [,16] [,17] [,18] [,19]
[1,] -4.114082 -0.9480789 -2.62226713 0.8886139 0.8016255 -0.5326564
[2,] 5.432922 -1.1240489 -0.07893925 -5.3639914 -0.2433817 0.5195113
[3,] 9.153406 -0.0632237 -1.93794887 -3.9074186 0.2141715 -2.2546693
[4,] -2.861580 -0.9751405 1.24502652 -1.3734872 0.7753580 2.9864834
[,20] [,21] [,22] [,23] [,24] [,25]
[1,] 0.1530494 -12.7521553 -0.04379439 -5.443037 3.638959 1.4422785
[2,] -0.6645321 -6.7172554 0.63558417 8.008657 -3.468454 0.5084303
[3,] 0.3913791 -9.1136820 0.16569721 -11.308577 8.196353 -0.4085334
[4,] 0.9890541 -0.5542702 -3.24013186 9.531922 -2.768149 0.3275535
[,26] [,27] [,28] [,29] [,30] [,31] [,32]
[1,] 0.1785547 0.91178617 -10.873109 -3.068303 1.6419882 1.2302157 -13.262331
[2,] 4.0022659 0.56739340 -3.731067 -5.150840 5.7959216 0.2442433 11.200128
[3,] -0.3898492 0.05527327 -4.056597 -1.637438 0.9201581 0.6460683 -1.504107
[4,] -0.9139431 0.72274478 6.708776 1.402386 -2.7245509 0.2247884 -5.814909
[,33] [,34] [,35] [,36] [,37] [,38]
[1,] 8.493528 0.69726638 -2.793107 -5.5463512 1.5968198 1.120505417
[2,] 14.881545 0.67883389 -1.066539 -0.7904754 0.7881829 -1.393462199
[3,] 1.369374 0.04299614 2.104279 2.3130399 0.1004095 -0.008649157
[4,] 1.619289 -0.21330197 -2.200302 6.2515668 0.7468363 -0.311324760
[,39] [,40] [,41] [,42] [,43] [,44]
[1,] 0.9747461 1.3935712 0.6351459 0.5345756 -6.2363677 0.737447715
[2,] 1.4124211 1.3547306 4.8429789 -0.3854967 -0.8666196 0.043082778
[3,] 0.1007951 0.1050633 -3.7642462 0.0192171 -9.3586181 0.009281951
[4,] 0.8103193 0.8071638 -1.0538311 0.2553783 3.2403313 0.026022000
[,45] [,46] [,47] [,48] [,49] [,50]
[1,] 0.1031021 -0.52565905 0.21263255 -1.3580107 0.4362964 -1.319039
[2,] -1.4930687 -0.06640997 -0.78735307 0.2261816 -0.8228456 -9.942783
[3,] -0.7108084 -0.06622821 -0.72678043 0.3052502 0.2467169 -4.891086
[4,] -1.3971819 -1.08568373 -0.05440328 -0.7078497 -0.1193886 4.623623
[,51] [,52] [,53] [,54] [,55] [,56]
[1,] -2.1019790 0.55996060 -1.2203908 1.44722910 1.3433224 -0.4996668
[2,] 0.6614202 1.25973904 2.3327283 -1.08548905 -0.2605022 -0.8027241
[3,] -0.4769154 0.09922888 -5.3476142 0.06093356 -0.5408303 0.1648481
[4,] -0.1910981 1.56255952 -0.5766839 0.26980861 0.6802437 -1.2573150
[,57] [,58] [,59] [,60] [,61] [,62] [,63]
[1,] 1.3453815 0.9246374 4.604761 -0.5026412 -1.3647587 1.1642328 -7.110061
[2,] 0.6231227 0.2074262 -4.119102 0.2209504 -0.4782332 1.6395040 -5.000899
[3,] 0.1039863 0.2607757 -3.825230 -0.9790100 1.0231241 -0.2652516 -6.128191
[4,] 0.3866469 -0.2645805 1.021891 0.3212598 -0.9354468 1.7864713 2.859762
[,64] [,65] [,66] [,67] [,68] [,69]
[1,] 0.2530175 -1.2514119 0.9796685 -0.1116582 9.744508 0.3847999
[2,] 0.5038803 5.2862629 3.4235546 0.6250464 -1.771537 1.1700264
[3,] 0.1780215 -3.5524398 -1.9778824 0.0158881 5.913390 -0.6822891
[4,] 0.5072427 -0.9449814 1.1418851 0.9997203 -5.362710 1.0559882
[,70] [,71] [,72] [,73] [,74] [,75]
[1,] -0.08824640 1.2501180 6.557149 -0.8612760 -0.17856649 -2.060116
[2,] -0.31535996 -3.3391399 -5.341758 0.1042648 -0.89080569 7.496918
[3,] 0.02367683 -9.5334034 2.315437 -0.3480289 0.02273287 -10.515743
[4,] 0.59565528 0.7093769 -0.452247 -0.2585190 0.11859215 1.568300
[,76] [,77] [,78] [,79] [,80] [,81]
[1,] -0.3980217 2.054010 -2.5157661 -0.5217707 8.596467 -11.330970
[2,] -0.8584628 2.554051 -5.9012881 1.0420254 2.225313 5.165783
[3,] -0.5279656 -3.168868 0.8442209 -0.3631158 3.563970 -21.780019
[4,] -0.3469584 -1.893197 2.2949434 -0.0821510 -4.733388 7.655913
[,82] [,83] [,84] [,85] [,86] [,87]
[1,] 0.07123087 2.1283745 1.7313156 -0.7942129 -0.679271256 -1.0266137
[2,] -2.76804974 2.7337430 0.5671591 -0.5611796 -0.325768254 -0.6547541
[3,] -0.67572628 2.6856190 -0.1256064 -6.1363315 -0.006873479 -0.1363419
[4,] -1.57509909 -0.9530489 0.8126473 -4.9381041 -0.607428402 -4.0822516
[,88] [,89] [,90] [,91] [,92] [,93]
[1,] 1.165184 -0.58213022 4.4429106 19.9091907 -4.59138196 0.8884782
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[3,] 3.020708986 -0.34663682 -1.42050244 -0.3923273 -0.13385456 11.216607
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$F
[,1] [,2] [,3] [,4] [,5] [,6] [,7]
[1,] -2.079379 -1.858700 -0.62254812 -2.008619 5.683756 -1.302857 6.293958
[2,] -3.240444 -2.491305 0.04080108 -1.210173 -2.348727 3.212495 10.202216
[3,] -3.062020 -1.645077 0.23505784 -2.143453 -0.143809 1.394338 -2.128206
[4,] 2.060501 1.843819 0.49831231 1.812534 -1.212826 -1.390965 -9.783532
[,8] [,9] [,10] [,11] [,12] [,13] [,14]
[1,] 2.2793299 -0.08023177 -7.959624 -1.181567 -0.2401349 -3.7622834 -4.212661
[2,] 0.8615443 1.52586846 5.410483 4.901174 0.7687708 -5.4541163 6.406408
[3,] 1.5596396 0.93537643 -2.874079 -3.812242 0.0323003 -3.9855473 9.450337
[4,] -0.1660043 -0.07825065 5.524377 -3.943065 0.7909295 0.7250558 -2.880223
[,15] [,16] [,17] [,18] [,19] [,20]
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[4,] -0.97605385 1.04136990 -1.1840889 0.7685866 2.9106685 0.9695983
[,21] [,22] [,23] [,24] [,25] [,26]
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[2,] -7.2240606 1.02836589 7.655521 -3.875245 0.5155647 4.40799351
[3,] -9.1166200 0.22968224 -11.902869 8.259694 -0.4330351 -0.47543336
[4,] -0.7720336 -3.09250186 9.672086 -2.422301 0.3481333 -0.73439568
[,27] [,28] [,29] [,30] [,31] [,32] [,33]
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[2,] 0.45430811 -5.018947 -5.753257 6.6722049 0.2278935 12.699582 15.906430
[3,] 0.02375847 -4.196162 -1.627932 0.9047582 0.6402336 -1.373244 1.233172
[4,] 0.76753698 6.507800 1.235364 -2.5848805 0.2556617 -5.564888 2.092564
[,34] [,35] [,36] [,37] [,38] [,39]
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[3,] 0.04865162 2.0625919 2.548534 0.07600542 -0.003564713 0.08495556
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[,40] [,41] [,42] [,43] [,44] [,45]
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[2,] 1.41409603 4.9244359 -0.45247948 -0.8250954 0.042384277 -1.4922297
[3,] 0.08851684 -4.0403504 0.01423001 -9.4400078 0.006575504 -0.6874025
[4,] 0.81441002 -0.6869143 0.25409742 2.8793840 0.032599107 -1.4048056
[,46] [,47] [,48] [,49] [,50] [,51]
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[,52] [,53] [,54] [,55] [,56] [,57]
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[248,] 5.333898e-01 1.645512e-203 6.657973e-185 0.4666101968
[249,] 4.937214e-01 1.680190e-174 1.260363e-162 0.5062785904
[250,] 5.561560e-01 7.779887e-221 8.106455e-198 0.4438440176
[251,] 4.967509e-01 2.576651e-176 4.548530e-164 0.5032490814
[252,] 4.859308e-01 1.073462e-169 6.907923e-150 0.5140691551
[253,] 5.157038e-01 5.292343e-190 1.635585e-179 0.4842961534
[254,] 4.984091e-01 1.740501e-177 2.904142e-160 0.5015909307
[255,] 4.693887e-01 1.763130e-158 7.764737e-145 0.5306113162
[256,] 4.853751e-01 3.509813e-169 4.136055e-156 0.5146249134
[257,] 4.378957e-01 9.168868e-138 3.016796e-125 0.5621043195
[258,] 4.462835e-01 4.410477e-143 6.458260e-131 0.5537164968
[259,] 4.336936e-01 1.295055e-135 3.363379e-117 0.5663063835
[260,] 4.341535e-01 3.146812e-136 6.028734e-123 0.5658464539
[261,] 4.034540e-01 1.012644e-117 4.178044e-110 0.5965459544
[262,] 3.911572e-01 5.648621e-111 7.927965e-104 0.6088427841
[263,] 4.135171e-01 1.174669e-122 1.809247e-114 0.5864829009
[264,] 3.601457e-01 4.098775e-95 6.682760e-85 0.6398542723
[265,] 3.603699e-01 5.304651e-95 2.767391e-83 0.6396300934
[266,] 3.619215e-01 3.219656e-95 2.781278e-85 0.6380785480
[267,] 3.240472e-01 1.252251e-77 1.366782e-68 0.6759527808
[268,] 3.095532e-01 4.928875e-71 1.152376e-64 0.6904468213
[269,] 3.346643e-01 2.109524e-82 1.127312e-71 0.6653357399
[270,] 3.144772e-01 2.586330e-73 8.104528e-69 0.6855227875
[271,] 3.012416e-01 5.381695e-67 2.473149e-59 0.6987584252
[272,] 3.186445e-01 1.020039e-74 4.533519e-68 0.6813554943
[273,] 2.735620e-01 4.367133e-56 2.627423e-51 0.7264380107
[274,] 3.038237e-01 2.029387e-68 9.336990e-64 0.6961762603
[275,] 2.616443e-01 5.090055e-51 3.455768e-45 0.7383556676
[276,] 2.609864e-01 1.119992e-50 1.864770e-49 0.7390135515
[277,] 2.038302e-01 2.886827e-31 1.113239e-30 0.7961697867
[278,] 2.262143e-01 8.904481e-40 5.130321e-35 0.7737856570
[279,] 2.470729e-01 1.762936e-46 2.682511e-40 0.7529271454
[280,] 2.103328e-01 1.716126e-33 3.078668e-31 0.7896672365
[281,] 2.072278e-01 2.068577e-34 1.304537e-29 0.7927721697
[282,] 2.323514e-01 1.714635e-41 7.787477e-39 0.7676486153
[283,] 1.973936e-01 8.746001e-31 5.546589e-28 0.8026063510
[284,] 1.669596e-01 2.113011e-23 4.140396e-20 0.8330404460
[285,] 1.521572e-01 1.652310e-19 3.317394e-17 0.8478427808
[286,] 1.201699e-01 1.307114e-13 3.103981e-12 0.8798301432
[287,] 1.330888e-01 5.824862e-16 1.111157e-13 0.8669112225
[288,] 9.244682e-02 5.722278e-09 5.870598e-09 0.9075531651
[289,] 1.174511e-01 1.294888e-13 1.151623e-10 0.8825489259
[290,] 1.407217e-01 2.893318e-17 3.364227e-15 0.8592782572
[291,] 6.874198e-02 1.791322e-06 6.483862e-07 0.9312555788
[292,] 7.680548e-02 5.182351e-08 6.170363e-06 0.9231882930
[293,] 4.382307e-02 7.661222e-04 3.125660e-04 0.9550982437
[294,] 7.704172e-02 1.842131e-07 2.719610e-06 0.9229553758
[295,] 4.804447e-02 1.086421e-04 6.040760e-04 0.9512428091
[296,] 7.283257e-02 2.264097e-07 4.894218e-05 0.9271182641
[297,] 1.811347e-02 3.161193e-04 2.950520e-03 0.9786198903
[298,] 3.347264e-02 3.014305e-04 6.148735e-04 0.9656110563
[299,] 1.006591e-02 4.318718e-03 4.146362e-03 0.9814690127
[300,] 1.644536e-03 2.838708e-03 4.420837e-04 0.9950746720
$P
[,1] [,2] [,3] [,4]
[1,] 2.097639e-02 0.000000e+00 0.000000000 0.00000000
[2,] 6.456086e-159 2.999597e-03 0.000000000 0.00000000
[3,] 1.658903e-141 7.846496e-158 0.009648433 0.00000000
[4,] 3.177566e-01 3.261808e-01 0.315885684 0.00655256
$alpha
NULL
$loglik
[1] -261341.2 -254907.6 -254233.6 -254164.3 -254141.1 -254127.6 -254118.2
[8] -254111.3 -254106.2 -254102.4 -254099.6 -254097.5 -254096.1 -254095.0
[15] -254094.1 -254093.5 -254093.0 -254092.6 -254092.3 -254092.0 -254091.8
[22] -254091.6 -254091.5 -254091.3 -254091.2 -254091.1 -254091.0 -254090.9
[29] -254090.9 -254090.8 -254090.7 -254090.7 -254090.6 -254090.6 -254090.5
[36] -254090.5 -254090.4 -254090.4 -254090.4 -254090.4 -254090.3 -254090.3
[43] -254090.3 -254090.3 -254090.2 -254090.2 -254090.2 -254090.2 -254090.2
[50] -254090.2 -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.1
[57] -254090.1 -254090.1 -254090.1 -254090.1 -254090.1 -254090.0 -254090.0
[64] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[71] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[78] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[85] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[92] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[99] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[106] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[113] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[120] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[127] -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0 -254090.0
[134] -254090.0 -254090.0 -254090.0
$BIC
[1] 521926
$niter
[1] 136
$status
[1] 0
$runtime
user system elapsed
376.620 28.784 126.927
In this example we obtain identical result, indicating convergence is perhaps not an issue for this model fit.