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2DMAP
2LD
2SNP
A
ACT
ADEGENET
ADMIXMAP
AGEINF
ALBERT
ALLASS
ALLEGRO
ALLELIX
ALOHOMORA
ALP
Altrans
ALTREE
AMELIA
ANALYZE
ANCESTRY
ANCESTRYMAP
ANNOVAR
ANTMAP
APE
APL-OSA
APM
ARIEL
ARLEQUIN
ARP.GEE
ASP/ASPSHARE
ASPEX
ASSOCIATIONVIEWER
AUTOSCAN
B
BAMA
BARS
BAYESFST
BDGEN
BEAGLE
BEAGLECALL
BEAM
BETA
BIMBAM
BIOIDE
BIOLAD-DB
BIRDSUITE
BLADE
BLOCK
BMAPBUILDER
BOOLD
BOOST
BOOSTRAPPER
BOREL
BOTTLENECK
BPPH
BQTL
BREAKDANCER
C
CAROL
CARTHAGENE
CASAVA
CASPAR
CATS
CC-QLS
CCRAVAT
CCREL
CEPH2CRI
CEPH2MAP
CFC
CHAPLIN
CHECKHET
CHECKMATRIX
CHIAMO
CHIP2SPELL
CHROMOSCAN
CHROMOSEG
CHROMSCAN
CLUMP
CLUSTAG
CMAP
COMBIN
COMDS
COMPOSITELD
COPE
COVIBD
CRIMAP
CRIMAP-PVM
CROSSFIND
CYRILLIC
D
DCHIP LINKAGE
DGENE
DHSMAP
DINDEL
DISENTANGLER
DMAP
DMLE
DNABASER
DOLINK
DPPH
E
EAGLET
EASYLINKAGE/EASYLINKAGE-PLUS
EASYPOP
ECLIPSE
EDAC
EH
EHAP
EHP
EHPLUS
EIGENSOFT/EIGENSTRAT
EM-DECODER
EMLD
ENDOG
ENTROPY BLOCKER
EPDT
EPISTACY
EQTL EXPLORER
ERPA
ET-TDT
ETDT
EVOKER
EXOMEPICKS
F
FAMHAP
FAMOZ
FASTEHPLUS
FASTER
FASTLINK
FASTMAP 1
FASTMAP 2
FASTSLINK
FBAT
FEST
FESTA
FINESSE
FINETTI
FIRSTORD
FISHER
FLOSS
G
G-MENDEL
GAIA
GAP
GAS
GAS2
GASP
GASSOC
GATK
GC/GCF
GCHAP
GDA
GEMS
GENABEL
GENECLASS
GENECOUNTING
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GENEHUNTER++SAD
GENEHUNTER-IMPRINTING
GENEHUNTER-MODSCORE
GENEHUNTER-PLUS
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GENESPRING GT
GENETIC POWER CALCULATOR
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GENOGRAM-MAKER
GENOME
GENOMESIMLA
GENOMIZER
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GERMLINE
GEST
GEVALT
GGSD
GGT
GHOST
GIST
GLFSINGLE/GLFTRIO/GLFMULTIPLES
GLIDERS
GLUE
GMA
GMCHECK
GOLD
GREGOR
GRIDQTL
GRONLOD
GRR
GS-EM
GSMA
GTOOL
GWAPOWER
GWASELECT
H
HAP 1
HAP 2
HAP-SAMPLE
HAPAR
HAPASSOC
HAPBLOCK
HAPBLOCK 2
HAPGEN
HAPINFERX
HAPLO 1
HAPLO 2
HAPLO.STAT
HAPLOBLOCK
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HAPLOBUILD
HAPLOCLUSTERS
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HIT
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HPLUS
HS-TDT
HTR
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HWMET
I
IBDREG
IGG
ILLUMINUS
ILR
IMPUTE
INSEGT
INTEGRAYEDMAP
INTERSNP
J
J/QTL
JENTI
JLIN
JOINMAP
JPSGCS
K
KBAC
KIN
KING
L
L-POP
LAMARC
LAMBDAA
LAMP
LAPSTRUCT
LCP
LDA
LDB/LDB+
LDGROUP
LDHAT
LDHEATMAP
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LINKAGE - CEPH
LINKAGE - general pedigrees
LINKAGE-IMPRINT
LINKBASE
LIPED
LNKTOCRI
LOCUSMAP
LOCUSZOOM
LOGINSERM_ESTIHAPLO
LOH-LINKAGE
LOKI
LOT
LRP
LRTAE
LSP
LTSOFT
M
MACH
MADELINE
MADMAPPER
MAGIC
MAIA
MAKEPED
MALDSOFT
MAMA
MANTEL-STRUCT
MAOS
MAP MANAGER QT
MAP MANAGER QTX
MAP/MAP+/MAP+H/MAP2000
MAPCHART
MAPCREATOR
MAPDISTO
MAPDRAW
MAPINSPECT
MAPL
MAPMAKER/EXP
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MAPPOP
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MAREYMAP
MARGARITA
MATLINK
MCLEEPS
MCQTL
MDBLOCKS
MDR
MDR-PDT
MECPM
MEGA2
MEGASNPHUNTER
MENDEL
MENDELSOFT
MERLIN
METAL
MFLINK
MGA-MAPF2
MIDAS
MILD
MIM
MINIMAC
MINSAGE
MITPENE
MIXSCORE
MKGST
MLBGH
MLD
MLR-TAGGING
MMDRAWER
MOLKIN
MORGAN
MOSCPHASER
MPDA
MRH
MULTIDISEQ
MULTIMAP
MULTIMAPPER
MULTIMAPPER/OUTBRED
MULTIPOPTAGSELECT
MULTIQTL
MULTISIM
MUTAGENESYS
N
NOCOM
NOPAR
NUCULAR
O
OLORIN
ONEMAP
OSA
OSIRIS
P
P_ACT
PANGAEA
PAP
PARENTE
PASS PEDIGREE
PATH
PAWE
PAWE-3D
PBAT
PDA
PDPSYS
PDT
PED
PEDAGREE
PEDCHECK
PEDFIDDLER
PEDHUNTER
PEDIGRAPH
PEDIGREE-VISUALIZER
PEDIGREE/DRAW
PEDIGREEQUERY
PEDJAVA
PEDMANAGER
PEDPACK
PEDPEEL
PEDPHASE
PEDPLOT
PEDRAW/WPEDRAW
PEDSCRIPT
PEDSTATS
PEDSYS
PEDVIZAPI
PEER
PELICAN
PHASE
PIAGE
PL-EM
PLABQTL
PLABSIM
PLAYPUS
PLINK
PLINK/SEQ
POINTER
POLYMORPHISM
POLYMUTT
POLYPHEN
POOL_STR
POOLSCORE
POPDIST
POPGEN
POWER
POWERMARKER
POWERTRIM
POWQ
POWTEST
PREPLINK
PREST
PRESTO
PROBMAX
PROC QTL
PROFILER
PROGENY
PRT
PSAT
PSEUDO
PSEUDOMARKER
PSEUDOMARKER.M
PYPOP
Q
QGENE
QMSIM
QTDT
QTL CAFE
QTL Cartographer
QTL EXPRESS
QTL-ALL
QTLNETWORK
QU-GENE
QUANTO
QUTIE
R
R/ADEGENET
R/ARP.GEE
R/BARS
R/COVIBD
R/EHP
R/ENTROPY_BLOCKER
R/FEST
R/GAP
R/GC R/GCF
R/GENABEL
R/GWAPOWER
R/HAPASSOC
R/HCLUST
R/IBDREG
R/LAPSTRUCT
R/LDGROUP
R/LDHEATMAP
R/LUCA
R/META
R/METASIM
R/ONEMAP
R/PIAGE
R/POOLSCORE
R/POPGEN
R/QTL
R/QTLBIM
R/QTLDESIGN
R/SNP.PLOTTER
R/SPECTRAL-GEM
R/STEPWISE
R/Superheat
R/TDTHAP
R/WEIGHTED_FDR
RC-TDT
REAPER
RECORD
RELATIVE
RELATIVEFINDER
RELCHECK
RELPAIR
RELTYPE
RHMAP
RHMAPPER
RISCALW
ROMPREV
ROSATTA SYLLEGO SYSTEM
RTDT
RVTESTS
S
SAGE
SAMTOOLS
SAS/GENETICS
SASGENE
SASQUANT
SCORE-SEQ
SCOUT
SDMINP
SEGPATH
SELSIM
SEQUENCE LD/SEQUENCE LDHOT
SGS
SIB-PAIR
SIBERROR
SIBLINK
SIBMED
SIBSIM
SIFT
SILCLOD
SIMCOAL
SIMHAP
SIMIBD
SIMLA
SIMLA 3
SIMLINK
SIMM
SIMPED
SIMPLE
SIMULAPLOT
SIMULATE
SIMUPOP
SIMWALK
SKAT
SLINK
SMOOTH
SNAP
SNAP 2
SNAP 3
SNIPPEEP
SNP ASSISTANT
SNP CHART
SNP HITLINK
SNP-HWE
SNP.PLOTTER
SNPALYZE
SNPEM
SNPFILE
SNPHAP
SNPHARVESTER
SNPLINK
SNPMSTAT
SNPP
SNPSTATS
SNPTEST
SOAP
SOLAR
SPAM
SPECTRAL-GEM
SPERM
SPERMSEG
SPIP
SPLAT
SPLINK
SPREG
SQTDT/SPDT
SQTL
sQTLSeekerR
SSAHASNP
START
STEPC
STEPWISE
STRAT
STRUCTURE
SUMSTAT
SUP
SUPERLINK
SVA
SVCC
SWEEP
SYZYGY
T
TAGGER
TAGIMPUTE
TAGSNP
TAGSTER
TASSEL
TDT-AE
TDT-PC
TDT/S-TDT
TDTASP
TDTHAP
TDTPOWER
TFPGA
THESIAS
TKMAP
TLINKAGE
TOMCAT
TRANSMIT
TRAP
TREELD
TREESCAN
TREESELECT
TRIMHAP
TUNA
TWOLOC
U
UMAKE
UNKNOWN
UNPHASED
UTIL
V
VAAST
Variant Association Tools
Variant Tools
VARSCAN
VG
VH
VITESSE
W
WEB-PREPLINK
WEBQTL
WEIGHTED_FDR
WGCNA
WHAIT
WHAP
WHICHRUN
X
XX
Y
YY
Z
ZAPLO
Clear History
Gao Wang
and
Ott lab
© 1995-2014, 2016+
Genetic Analysis Software | The Rockefeller List
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Lists of software
Lists of R packages
Other lists
Lists of software
ENCODE software list
Some earlier software can be downloaded from EBI Linkage and Mapping Software Repository
ftp://ftp.ebi.ac.uk/pub/software/linkage_and_mapping
Lists of R packages
Here is a partial list of
statistical genetics R packages
.
More R packages yet can be found at
[1]
,
[2]
,
[3]
,
[4]
, and other places.