JPSGCS

Record added by Jurg Ott (the original Rockefeller list)

Full Name

Java Programs for Statistical Genetics and Computational Statistics

Description

These programs have been developed since 2002 to address problems in statistical genetics. However, they include several programs and packages that may be more generally useful, for instance, programs to draw and manipulate graphs, simulation programs, and programs to estimate graphical models.

Author

Alun Thomas

URL

http://balance.med.utah.edu/wiki/index.php/JPSGCS

Language

Java

OS

Linux, MacOS, MS-Windows,

EXE

ApproxGCHap, CheckErrors, CheckFormat, CheckParameters, CheckPedigree, CheckTriplets, Complete, DownCodeAlleles, FitGM, FitGMLD, FitIntervalLD, GCHap, GeneCountAlleles, GeneDrop, GeneDrops, GetPolymorphisms, HGS, HapMapToLinkage, HetCutOff, HetLods, Heterozygosities, HomozygousSGS, LinkageToFastPhase, LinkageToPhase, LocusLogLikelihoods, MakePed, MakeProbands, MaxTwoPointLods, McCheck, McKinship, McLinkage, McMultiPoints, McTLods, ObligateErrors, SGS, SelectKindreds, SelectLoci, SelectPedigrees, SimHGS, SimHomozygousSGS, SimSGS, Triangulate, TrimPed, TwoPointLods, ViewDAG, ViewGraph, ViewLinkPed, ViewPed, ZeroLoopPed, cMorgansToTheta

GENEPI.JAR