sQTLSeekerR

Record added by Jurg Ott (the original Rockefeller list)

Version

github / R 3.1+

Description

sQTLseekeR is a R package to detect splicing QTLs (sQTLs), which are variants associated with change in the splicing pattern of a gene. Here, splicing patterns are modeled by the relative expression of the transcripts of a gene.

Year

2014

Author

  • Jean Monlong

  • Roderic Guigó

    URL

    http://big.crg.cat/computational_biology_of_rna_processing/sqtlseeker

    Language

    R

    Reference

    Monlong, J. et al. Identification of genetic variants associated with alternative splicing using sQTLseekeR. Nat. Commun. 5:4698 doi: 10.1038/ncomms5698 (2014).

    Tag

    splicing, sQTL