Record added by Jurg Ott (the original Rockefeller list)
2.6.1
Variant tools is a software tool for the manipulation, annotation, selection, simulation, and analysis of variants in the context of next-gen sequencing analysis. Unlike some other tools used for Next-Gen sequencing analysis, variant tools is project based and provides a whole set of tools to manipulate and analyze genetic variants.
2012
Bo Peng
http://varianttools.sourceforge.net
C++, Python
Linux, MacOS
vtools
F. Anthony San Lucas, Gao Wang, Paul Scheet, and Bo Peng (2012) Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools, Bioinformatics 28 (3): 421-422.
NGS variant filtering, annotation