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- 2DMAP
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A
- ACT
- ADEGENET
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- Altrans
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- ANCESTRY
- ANCESTRYMAP
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- AUTOSCAN
B
- BAMA
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- BEAGLECALL
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C
- CAROL
- CARTHAGENE
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D
- DCHIP LINKAGE
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E
- EAGLET
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- EIGENSOFT/EIGENSTRAT
- EM-DECODER
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- ENTROPY BLOCKER
- EPDT
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- EQTL EXPLORER
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- EXOMEPICKS
F
- FAMHAP
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- FASTEHPLUS
- FASTER
- FASTLINK
- FASTMAP 1
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- FASTSLINK
- FBAT
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- FLOSS
G
- G-MENDEL
- GAIA
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- GENEHUNTER++SAD
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- GENETIC POWER CALCULATOR
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- GLFSINGLE/GLFTRIO/GLFMULTIPLES
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- GTOOL
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H
- HAP 1
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- HAP-SAMPLE
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- HAPBLOCK
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- HAPGEN
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I
- IBDREG
- IGG
- ILLUMINUS
- ILR
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- INSEGT
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- INTERSNP
J
- J/QTL
- JENTI
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K
- KBAC
- KIN
- KING
L
- L-POP
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- LCP
- LDA
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- LDGROUP
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- LDHEATMAP
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- LDMET
- LDSELECT
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- LEA
- LINKAGE - CEPH
- LINKAGE - general pedigrees
- LINKAGE-IMPRINT
- LINKBASE
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M
- MACH
- MADELINE
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- MAGIC
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- MOLKIN
- MORGAN
- MOSCPHASER
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- MULTIMAPPER
- MULTIMAPPER/OUTBRED
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- MULTISIM
- MUTAGENESYS
N
- NOCOM
- NOPAR
- NUCULAR
O
- OLORIN
- ONEMAP
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- OSIRIS
P
- P_ACT
- PANGAEA
- PAP
- PARENTE
- PASS PEDIGREE
- PATH
- PAWE
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- PBAT
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- PDPSYS
- PDT
- PED
- PEDAGREE
- PEDCHECK
- PEDFIDDLER
- PEDHUNTER
- PEDIGRAPH
- PEDIGREE-VISUALIZER
- PEDIGREE/DRAW
- PEDIGREEQUERY
- PEDJAVA
- PEDMANAGER
- PEDPACK
- PEDPEEL
- PEDPHASE
- PEDPLOT
- PEDRAW/WPEDRAW
- PEDSCRIPT
- PEDSTATS
- PEDSYS
- PEDVIZAPI
- PEER
- PELICAN
- PHASE
- PIAGE
- PL-EM
- PLABQTL
- PLABSIM
- PLAYPUS
- PLINK
- PLINK/SEQ
- POINTER
- POLYMORPHISM
- POLYMUTT
- POLYPHEN
- POOL_STR
- POOLSCORE
- POPDIST
- POPGEN
- POWER
- POWERMARKER
- POWERTRIM
- POWQ
- POWTEST
- PREPLINK
- PREST
- PRESTO
- PROBMAX
- PROC QTL
- PROFILER
- PROGENY
- PRT
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- PSEUDO
- PSEUDOMARKER
- PSEUDOMARKER.M
- PYPOP
Q
- QGENE
- QMSIM
- QTDT
- QTL CAFE
- QTL Cartographer
- QTL EXPRESS
- QTL-ALL
- QTLNETWORK
- QU-GENE
- QUANTO
- QUTIE
R
- R/ADEGENET
- R/ARP.GEE
- R/BARS
- R/COVIBD
- R/EHP
- R/ENTROPY_BLOCKER
- R/FEST
- R/GAP
- R/GC R/GCF
- R/GENABEL
- R/GWAPOWER
- R/HAPASSOC
- R/HCLUST
- R/IBDREG
- R/LAPSTRUCT
- R/LDGROUP
- R/LDHEATMAP
- R/LUCA
- R/META
- R/METASIM
- R/ONEMAP
- R/PIAGE
- R/POOLSCORE
- R/POPGEN
- R/QTL
- R/QTLBIM
- R/QTLDESIGN
- R/SNP.PLOTTER
- R/SPECTRAL-GEM
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- R/WEIGHTED_FDR
- RC-TDT
- REAPER
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- RELATIVE
- RELATIVEFINDER
- RELCHECK
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- RELTYPE
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- ROMPREV
- ROSATTA SYLLEGO SYSTEM
- RTDT
- RVTESTS
S
- SAGE
- SAMTOOLS
- SAS/GENETICS
- SASGENE
- SASQUANT
- SCORE-SEQ
- SCOUT
- SDMINP
- SEGPATH
- SELSIM
- SEQUENCE LD/SEQUENCE LDHOT
- SGS
- SIB-PAIR
- SIBERROR
- SIBLINK
- SIBMED
- SIBSIM
- SIFT
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- SIMCOAL
- SIMHAP
- SIMIBD
- SIMLA
- SIMLA 3
- SIMLINK
- SIMM
- SIMPED
- SIMPLE
- SIMULAPLOT
- SIMULATE
- SIMUPOP
- SIMWALK
- SKAT
- SLINK
- SMOOTH
- SNAP
- SNAP 2
- SNAP 3
- SNIPPEEP
- SNP ASSISTANT
- SNP CHART
- SNP HITLINK
- SNP-HWE
- SNP.PLOTTER
- SNPALYZE
- SNPEM
- SNPFILE
- SNPHAP
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- SNPLINK
- SNPMSTAT
- SNPP
- SNPSTATS
- SNPTEST
- SOAP
- SOLAR
- SPAM
- SPECTRAL-GEM
- SPERM
- SPERMSEG
- SPIP
- SPLAT
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- SPREG
- SQTDT/SPDT
- SQTL
- sQTLSeekerR
- SSAHASNP
- START
- STEPC
- STEPWISE
- STRAT
- STRUCTURE
- SUMSTAT
- SUP
- SUPERLINK
- SVA
- SVCC
- SWEEP
- SYZYGY
T
- TAGGER
- TAGIMPUTE
- TAGSNP
- TAGSTER
- TASSEL
- TDT-AE
- TDT-PC
- TDT/S-TDT
- TDTASP
- TDTHAP
- TDTPOWER
- TFPGA
- THESIAS
- TKMAP
- TLINKAGE
- TOMCAT
- TRANSMIT
- TRAP
- TREELD
- TREESCAN
- TREESELECT
- TRIMHAP
- TUNA
- TWOLOC
U
- UMAKE
- UNKNOWN
- UNPHASED
- UTIL
V
- VAAST
- Variant Association Tools
- Variant Tools
- VARSCAN
- VG
- VH
- VITESSE
W
- WEB-PREPLINK
- WEBQTL
- WEIGHTED_FDR
- WGCNA
- WHAIT
- WHAP
- WHICHRUN
X
- XX
Y
- YY
Z
- ZAPLO

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