GWAS Quality Control |
genotype coding |
|
minor allele frequency |
|
Hardy-Weinberg equilibrium |
GWAS Basics |
ordinary least squares |
|
summary statistics |
|
p value |
Case-control GWAS |
odds ratio |
|
summary statistics |
Conditional or Joint Analysis |
marginal joint effects |
Fine Mapping |
linkage disequilibrium |
|
summary statistics |
|
Bayes factor |
Fine Mapping/Colocalization |
Bayesian model comparison |
Meta-Analysis |
meta analysis fixed effect |
|
meta analysis random effect |
Multi-trait Association |
Bayesian multivariate normal mean model |
Cross-ancestry Association |
Bayesian multivariate normal mean model |
Enrichment Analysis |
odds ratio |
LD Score Regression |
linkage disequilibrium |
|
linkage disequilibrium score |
Heritability |
proportion of variance explained |
|
linkage disequilibrium score |
Kinship/Relatedness |
genetic relationship matrix |
Mendelian Randomization |
confounder |
|
collider |
|
mediator |
TWAS |
mediator |
|
marginal joint effects |
Mixed Effects Models |
linear mixed model |
Genetic Correlation |
Bayesian multivariate normal mean model |
|
linkage disequilibrium score |
Population Stratification |
random effect |
|
linear mixed model |
|
confounder |
Pleiotropy/Colocalization |
Bayesian multivariate normal mean model |
|
Bayesian mixture model |
|
Bayesian model comparison |
Interaction and Epistasis |
proportion of variance explained |
|
ordinary least squares |
Variance Components |
proportion of variance explained |
Bayesian GWAS |
Bayesian frequentist |
|
Bayes rule |
|
Bayesian normal mean model |
Genetic Architecture |
linkage disequilibrium |
|
linkage disequilibrium score |
|
proportion of variance explained |
|
Bayesian mixture model |
Polygenic Risk Scores |
proportion of variance explained |
|
ordinary least squares |