Record added by Jurg Ott (the original Rockefeller list)
3.2.1 (May 2010)
BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples. BEAGLE can
phase genotype data (i.e. infer haplotypes) for unrelated individuals, parent-offspring pairs, and parent-offspring trios
infer sporadic missing genotype data
impute ungenotyped markers that have been genotyped in a reference panel
perform single marker and haplotypic association analysis
detect genetic regions that are homozygous-by-descent in an individual or identical-by-descent in pairs of individuals.
Brian L Browning
Sharon R Browning (email: email@example.com)
MS-Windows, Linux, UNIX(Solaris), MacOS
Browning SR and Browning BR (2007), “Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering”, American Journal of Human Genetics, 81(5):1084-1097
Browning BR and Browning SR (2007), “Efficient multilocus association testing for whole genome association studies using localized haplotype clustering”, Genetic Epidemiology, 31:365-375.