Record added by Jurg Ott (the original Rockefeller list)
Haplotype Trend Regression
Haplotype association mapping using unrelated individuals; “fixed” and “sliding” window analysis; overall tests and tests for individual haplotype effects
C++, Bash shell
emgi.exe (fixed number of markers), bash emgi.sh (sliding window)
Zaykin DV, Westfall PH, Young SS, Karnoub MC, Wagner MJ, Ehm MG (2002), “Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals”, Human Heredity, 53:79-91.