Record added by Jurg Ott (the original Rockefeller list)
github / R 3.1+
sQTLseekeR is a R package to detect splicing QTLs (sQTLs), which are variants associated with change in the splicing pattern of a gene. Here, splicing patterns are modeled by the relative expression of the transcripts of a gene.
Monlong, J. et al. Identification of genetic variants associated with alternative splicing using sQTLseekeR. Nat. Commun. 5:4698 doi: 10.1038/ncomms5698 (2014).