Record added by Jurg Ott (the original Rockefeller list)
Case-control HAPLotype INference package
Chaplin is a software program for identifying specific haplotypes or haplotype features that are associated with disease using genotype data from a case-control study.
Glen Satten (Emory University)
FORTRAN90 (CVF 6.6) with IMSL routines
M Epstein, G Satten (2003), “Inference on haplotype effects in case-control studies using unphased genotype data”, American Journal of Human Genetics, 73(6):1316-1329
Satten, Epstein (2004), “Comparison of prospective and retrospective methods for haplotype inference in case-control studies”, Genetic Epidemiology, 27(3):192-201