HAPLOBLOCK

Record added by Jurg Ott (the original Rockefeller list)

Version

1.2 (April 28, 2004)

Description

HAPLOBLOCK is a software package which provides an integrated approach to haplotype block identification, haplotype resolution and linkage disequilibrium mapping, suitable for high-density phased or unphased SNP data.

Author

Gideon Greenspan (web/ftp: http://www.gidgreen.com/) Dan Geiger (web/ftp: http://www.cs.technion.ac.il/people/dang/)

URL

http://bioinfo.cs.technion.ac.il/haploblock/

Language

C

OS

UNIX(Solaris), Linux, MacOS X

EXE

haploblock_b, haploblock_n

Reference

  • Greenspan, Geiger (2004), “Model-based inference of haplotype block variation”, Journal of Computational Biology, 11(2-3):493-504.

  • Greenspan, Geiger (2004), “High density linkage disequilibrium mapping using models of haplotype block variation”, Bioinformatics, 20(1):137-144.

  • Instruction Manual: http://bioinfo.cs.technion.ac.il/haploblock/HaploBlock_Manual.pdf

  • LD Mapping Supplement http://bioinfo.cs.technion.ac.il/haploblock/HaploBlock_Mapping.pdf