Variant Association Tools

Record added by Jurg Ott (the original Rockefeller list)

Description

Variant Association Tools inherits the intuitive command-line interface of variant tools with re-design and implementation of its infrastructure to accommodate the scale of dataset generated from nowadays sequencing efforts on large populations.

Year

2012

Author

  • Gao Wang

  • Bo Peng

  • Suzanne M. Leal

URL

http://varianttools.sourceforge.net/VAT

Language

C++, Python

OS

Linux, MacOS

EXE

vtools

Reference

Gao T. Wang, Bo Peng and Suzanne M. Leal (2014) Variant Association Tools for Quality Control and Analysis of Large-Scale Sequence and Genotyping Array Data, The American Journal of Human Genetics 94 (5): 770–83.

Tag

Rare variant association testing