Record added by Jurg Ott (the original Rockefeller list)
Integrate Genotypes for genome-wide Genetic studies
IGG is an open-source Java package with graphic interface to efficiently and consistently integrate genotypes across high throughput genotyping platforms (e.g., Affymetrix and Illumina), the HapMap genotype repository (http://www.hapmap.org/), and even genotypes from the collaborators’ projects. It is equipped with a series of functions to control qualities of genotype integration and to flexibly export genotypes for genetic studies as well.
Miao-Xin Li (email: email@example.com)
Li, Jiang, Ho, Song, Sham (2007), “IGG: A tool to integrate GeneChips for genetic studies”, Bioinformatics, 23(22):3105-3107.
Li, Jiang, Kao, Sham, Song (2009), “IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis”, Bioinformatics, 25(11):1449-1450.